TF_ChIP-seq_ENCSR504HOI
TF_ChIP-seq ENCSR504HOI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SRF" and target="SRF"]
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| Id: | TF_ChIP-seq/ENCSR504HOI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR504HOI [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SRF" and target="SRF"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SRF output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN744ZZP|/analyses/ENCAN744ZZP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF252BIS|/files/ENCFF252BIS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF252BIS|/files/ENCFF252BIS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR504HOI | float |
TF_ChIP-seq_ENCSR504HOI |
TF_ChIP-seq ENCSR504HOI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SRF" and target="SRF"]
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[16.6, 2.79e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF716OTE.bed.gz | 57.25 KB | aa6e94c32e282b329cc8eddfb6d1b994 |
| ENCFF716OTE.bed.gz.dvc | 99.0 B | 05455a08b79355001ad89ea752425036 |
| ENCFF716OTE.tabix.bed.gz | 36.72 KB | 1882cbbfbe9b99232e0b841d59389fb4 |
| ENCFF716OTE.tabix.bed.gz.dvc | 105.0 B | 61dddcdcd51ac2560acf0919c3e37f82 |
| ENCFF716OTE.tabix.bed.gz.tbi | 29.1 KB | 9471d93c0808a63fbb79316144e984cd |
| ENCFF716OTE.tabix.bed.gz.tbi.dvc | 109.0 B | 2118e57eeefdeb355e4a350962e475fe |
| genomic_resource.yaml | 2.95 KB | 41bc8a5288e10ee25cf0a42cc8bb24ef |
| genomic_resource_original.yaml | 2.79 KB | 186c3b499d5f148d65ab02bd0871a5e6 |
| statistics/ |