TF_ChIP-seq_ENCSR502NRF
TF_ChIP-seq ENCSR502NRF [biosample_summary="Homo sapiens MCF-7" and target="ELF1"]
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| Id: | TF_ChIP-seq/ENCSR502NRF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR502NRF [biosamplesummary="Homo sapiens MCF-7" and target="ELF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN335DXH|/analyses/ENCAN335DXH/} has in progress subobject document {72170544-aa75-439f-9b66-476db132e725|/documents/72170544-aa75-439f-9b66-476db132e725/} audit_internal_action: Released analysis {ENCAN335DXH|/analyses/ENCAN335DXH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF180BFJ|/files/ENCFF180BFJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF180BFJ|/files/ENCFF180BFJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR502NRF | float |
TF_ChIP-seq_ENCSR502NRF |
TF_ChIP-seq ENCSR502NRF [biosample_summary="Homo sapiens MCF-7" and target="ELF1"]
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[15.5, 7.53e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF989DLF.bed.gz | 365.93 KB | 64dcfd03d2afc7916b1a291e433ac3b0 |
| ENCFF989DLF.bed.gz.dvc | 100.0 B | 631b703cbcd4103f65a1673552a37e7c |
| ENCFF989DLF.tabix.bed.gz | 249.44 KB | b3e6138aafee3dca2c64949b73d508c4 |
| ENCFF989DLF.tabix.bed.gz.dvc | 106.0 B | f15e5f23e3d554af3c89d7f2d6d0b5b3 |
| ENCFF989DLF.tabix.bed.gz.tbi | 134.69 KB | 090ef3d685548d5476fe5d192bcc4f22 |
| ENCFF989DLF.tabix.bed.gz.tbi.dvc | 110.0 B | 040da37fcf42c3681b265fbda396ac14 |
| genomic_resource.yaml | 2.87 KB | cabb142a60978675e24aba5475c12f65 |
| genomic_resource_original.yaml | 2.78 KB | 23eaf6e22685520dc5611a7215b72871 |
| statistics/ |