TF_ChIP-seq_ENCSR501DKS
TF_ChIP-seq ENCSR501DKS [biosample_summary="Homo sapiens GM12878" and target="TCF7"]
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| Id: | TF_ChIP-seq/ENCSR501DKS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR501DKS [biosamplesummary="Homo sapiens GM12878" and target="TCF7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN118IPG|/analyses/ENCAN118IPG/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF086LJZ|/files/ENCFF086LJZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19463033 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF305ICK|/files/ENCFF305ICK/}, {ENCFF817AOQ|/files/ENCFF817AOQ/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.12. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF448TPQ|/files/ENCFF448TPQ/}, {ENCFF116JVL|/files/ENCFF116JVL/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.12. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR501DKS | float |
TF_ChIP-seq_ENCSR501DKS |
TF_ChIP-seq ENCSR501DKS [biosample_summary="Homo sapiens GM12878" and target="TCF7"]
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[6.1, 525] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF305ICK.bed.gz | 173.07 KB | a4d821726cb81b6e654150bb39ba9b05 |
| ENCFF305ICK.bed.gz.dvc | 100.0 B | e05cfd1819fa8e0d9dbb99cc39523040 |
| ENCFF305ICK.tabix.bed.gz | 122.03 KB | 69749b48201afd6439bd967e6b99538f |
| ENCFF305ICK.tabix.bed.gz.dvc | 106.0 B | 1f09535eb9d575c1830d5e48d8acba23 |
| ENCFF305ICK.tabix.bed.gz.tbi | 76.0 KB | 92ab552924c7f07bd4c31cddca1b4c77 |
| ENCFF305ICK.tabix.bed.gz.tbi.dvc | 109.0 B | 169418fb21f2ff6160e3cd4cc2fd3363 |
| genomic_resource.yaml | 3.09 KB | 89e420e39f6056c8dd47403b490ea503 |
| genomic_resource_original.yaml | 2.99 KB | 6b826deb8165862f761f5df59755d40c |
| statistics/ |