TF_ChIP-seq_ENCSR497VFH
TF_ChIP-seq ENCSR497VFH [biosample_summary="Homo sapiens K562" and target="ZNF639"]
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| Id: | TF_ChIP-seq/ENCSR497VFH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR497VFH [biosamplesummary="Homo sapiens K562" and target="ZNF639"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF404EVY|/files/ENCFF404EVY/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN590XYM|/analyses/ENCAN590XYM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF411KAB|/files/ENCFF411KAB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19273399 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF639-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF947YGS|/files/ENCFF947YGS/}, {ENCFF404EVY|/files/ENCFF404EVY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.92 and a self consistency ratio of 2.46. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF732BRI|/files/ENCFF732BRI/}, {ENCFF224KBA|/files/ENCFF224KBA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.92 and a self consistency ratio of 2.46. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR497VFH | float |
TF_ChIP-seq_ENCSR497VFH |
TF_ChIP-seq ENCSR497VFH [biosample_summary="Homo sapiens K562" and target="ZNF639"]
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[10.9, 1.96e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF404EVY.bed.gz | 155.4 KB | dd691acc7afd56a46916b5f1200a7c08 |
| ENCFF404EVY.bed.gz.dvc | 100.0 B | 2a697a78d86f619d0927dcc464f5a8dc |
| ENCFF404EVY.tabix.bed.gz | 106.96 KB | 4aa7ae947cdf7c3c3b643b6f22dddca1 |
| ENCFF404EVY.tabix.bed.gz.dvc | 106.0 B | c065cc8020916edffed6360fd2d0347f |
| ENCFF404EVY.tabix.bed.gz.tbi | 62.59 KB | 8552780a23bcd634f7f94ef1e65b1ba1 |
| ENCFF404EVY.tabix.bed.gz.tbi.dvc | 109.0 B | d45e4818d01ff53f55c92a0cb0039ffb |
| genomic_resource.yaml | 3.7 KB | f7104ae02d54c0ce6afea50e2f60858b |
| genomic_resource_original.yaml | 3.61 KB | 33c0bd1587867b4a7cd00882df02bbeb |
| statistics/ |