TF_ChIP-seq_ENCSR494TNM
TF_ChIP-seq ENCSR494TNM [biosample_summary="Homo sapiens testis tissue male adult (37 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR494TNM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR494TNM [biosamplesummary="Homo sapiens testis tissue male adult (37 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN206DNK|/analyses/ENCAN206DNK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF990EXV|/files/ENCFF990EXV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF990EXV|/files/ENCFF990EXV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.02. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR494TNM | float |
TF_ChIP-seq_ENCSR494TNM |
TF_ChIP-seq ENCSR494TNM [biosample_summary="Homo sapiens testis tissue male adult (37 years)" and target="CTCF"]
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[8.66, 950] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF432XLE.bed.gz | 433.25 KB | 6871e52c9ac95a1732d9d852967f62b7 |
| ENCFF432XLE.bed.gz.dvc | 100.0 B | 265651d48f4d77ac9e94554b894bcc4c |
| ENCFF432XLE.tabix.bed.gz | 309.68 KB | 7206a5b763277dc67ddc8cb5453d8310 |
| ENCFF432XLE.tabix.bed.gz.dvc | 106.0 B | 3e1f502af47a7d6a25d0f5876570be23 |
| ENCFF432XLE.tabix.bed.gz.tbi | 176.29 KB | 0d916a4c3ae9bbe2ebcc693ba1e9ba9e |
| ENCFF432XLE.tabix.bed.gz.tbi.dvc | 110.0 B | ea7959bcb2e15dddc3ed2123acd6c687 |
| genomic_resource.yaml | 2.72 KB | 6c1d6ee59c5603055214ec13f6e4cb5e |
| genomic_resource_original.yaml | 2.6 KB | 490cabc250970f1abc437c0023af4986 |
| statistics/ |