TF_ChIP-seq_ENCSR494TDU
TF_ChIP-seq ENCSR494TDU [biosample_summary="Homo sapiens K562" and target="NRF1"]
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| Id: | TF_ChIP-seq/ENCSR494TDU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR494TDU [biosamplesummary="Homo sapiens K562" and target="NRF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF543STN|/files/ENCFF543STN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN111HME|/analyses/ENCAN111HME/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF337GMY|/files/ENCFF337GMY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF337GMY|/files/ENCFF337GMY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.09. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR494TDU | float |
TF_ChIP-seq_ENCSR494TDU |
TF_ChIP-seq ENCSR494TDU [biosample_summary="Homo sapiens K562" and target="NRF1"]
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[10.6, 6.16e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF543STN.bed.gz | 603.38 KB | a0c264cf57e6f232c64edeacf60a911a |
| ENCFF543STN.bed.gz.dvc | 100.0 B | 5de123a5ec2793557e8b98e1c79e4028 |
| ENCFF543STN.tabix.bed.gz | 419.11 KB | 7a4331a2043937fbfd6d9eede4aea18e |
| ENCFF543STN.tabix.bed.gz.dvc | 106.0 B | d2e3ae13d1b5de307d06adf0d29fb925 |
| ENCFF543STN.tabix.bed.gz.tbi | 172.96 KB | 09c8a4dde3ad2acff5658f2cffcc2c72 |
| ENCFF543STN.tabix.bed.gz.tbi.dvc | 110.0 B | 12608144a8f6ad16da21d2ddb7ce42c8 |
| genomic_resource.yaml | 2.83 KB | 740401f07f54f01da7e484326dd96664 |
| genomic_resource_original.yaml | 2.73 KB | 65708d50bd6ca97fc8895aa2ad7bdb89 |
| statistics/ |