TF_ChIP-seq_ENCSR494HMS
TF_ChIP-seq ENCSR494HMS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8L" and target="AKAP8L"]
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| Id: | TF_ChIP-seq/ENCSR494HMS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR494HMS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8L" and target="AKAP8L"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8L output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN368GRP|/analyses/ENCAN368GRP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF440JDA|/files/ENCFF440JDA/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF440JDA|/files/ENCFF440JDA/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.63. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF449JAV|/files/ENCFF449JAV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF449JAV|/files/ENCFF449JAV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR494HMS | float |
TF_ChIP-seq_ENCSR494HMS |
TF_ChIP-seq ENCSR494HMS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8L" and target="AKAP8L"]
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[10.4, 308] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF786UOS.bed.gz | 99.67 KB | 3b539e2960024967ad179dc34adcbdeb |
| ENCFF786UOS.bed.gz.dvc | 100.0 B | 3af44cc1cc6a1a73b8847d64286b66de |
| ENCFF786UOS.tabix.bed.gz | 75.47 KB | 559551246557d53b0c22a863c7069580 |
| ENCFF786UOS.tabix.bed.gz.dvc | 105.0 B | 258eeb19de16e816157e0d8f3a82a179 |
| ENCFF786UOS.tabix.bed.gz.tbi | 35.32 KB | 07dc4b5c49d5e335792f09bc6bac2f35 |
| ENCFF786UOS.tabix.bed.gz.tbi.dvc | 109.0 B | 6b198e43cd209717617bdfc6ccb5bfe1 |
| genomic_resource.yaml | 4.24 KB | 3a2df46b18195d51d139c53c89e4358d |
| genomic_resource_original.yaml | 4.07 KB | 3252bba2cb446f26f69f05abe7b1ef3e |
| statistics/ |