| Id: | TF_ChIP-seq/ENCSR493VBX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR493VBX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN31" and target="ZSCAN31"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN31 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN903VAM|/analyses/ENCAN903VAM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN903VAM|/analyses/ENCAN903VAM/} has in progress subobject document {1c2689b2-3e82-4f09-aa97-fe3284f4a932|/documents/1c2689b2-3e82-4f09-aa97-fe3284f4a932/} audit_warning: Processed alignments file {ENCFF806KSG|/files/ENCFF806KSG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 19342505 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZSCAN31-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF146ZVA|/files/ENCFF146ZVA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF146ZVA|/files/ENCFF146ZVA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.96. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF806KSG|/files/ENCFF806KSG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF806KSG|/files/ENCFF806KSG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.12. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR493VBX | float |
TF_ChIP-seq_ENCSR493VBX |
TF_ChIP-seq ENCSR493VBX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN31" and target="ZSCAN31"]
|
 |
[9.87, 636] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF810TWJ.bed.gz | 385.67 KB | a6fd1e809a4e5464b685d9ba44e3f5d7 |
| ENCFF810TWJ.bed.gz.dvc | 100.0 B | 9dce71109a4133fbd5716a03195c8cfe |
| ENCFF810TWJ.tabix.bed.gz | 314.92 KB | 14fbec44fc37df156aecae248903bbca |
| ENCFF810TWJ.tabix.bed.gz.dvc | 106.0 B | abbfbabcca37a13b582bdf060b7d7dbc |
| ENCFF810TWJ.tabix.bed.gz.tbi | 113.31 KB | dd0a268c60d0051ad2f0e75551fba81a |
| ENCFF810TWJ.tabix.bed.gz.tbi.dvc | 110.0 B | 9a35525e4f3c89198a8f6f0110f03b26 |
| genomic_resource.yaml | 4.94 KB | 4a88133ab5512baddccf2b6bf482429d |
| genomic_resource_original.yaml | 4.78 KB | 1c723032420921e4474769c5c4b85ede |
| statistics/ |