TF_ChIP-seq_ENCSR493JTJ
TF_ChIP-seq ENCSR493JTJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6" and target="ETV6"]
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| Id: | TF_ChIP-seq/ENCSR493JTJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR493JTJ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6" and target="ETV6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ETV6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN448ZMK|/analyses/ENCAN448ZMK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF336GXQ|/files/ENCFF336GXQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF336GXQ|/files/ENCFF336GXQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.69. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF381WHA|/files/ENCFF381WHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF381WHA|/files/ENCFF381WHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.50. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF405QTW|/files/ENCFF405QTW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.18 and a self consistency ratio of 4.19. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR493JTJ | float |
TF_ChIP-seq_ENCSR493JTJ |
TF_ChIP-seq ENCSR493JTJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6" and target="ETV6"]
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[9.68, 268] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF405QTW.bed.gz | 61.99 KB | 3116158f4ce629d42e5154b319a0f0a2 |
| ENCFF405QTW.bed.gz.dvc | 99.0 B | 40129eb37eb4e5ceb554c357f571b10e |
| ENCFF405QTW.tabix.bed.gz | 43.16 KB | a9e5b359806517cceb26810827d08ecf |
| ENCFF405QTW.tabix.bed.gz.dvc | 105.0 B | 8685250e6deb98046a7706657dbe4ae0 |
| ENCFF405QTW.tabix.bed.gz.tbi | 30.24 KB | f4c0c420b99bf90820b7fecc58d1198b |
| ENCFF405QTW.tabix.bed.gz.tbi.dvc | 109.0 B | 6658098817b9d0c82e85ba385d32a2b7 |
| genomic_resource.yaml | 4.74 KB | 835eb48a9ee375c1dfd66e1dae396d0a |
| genomic_resource_original.yaml | 4.58 KB | df3e6f6aa1cd1f21dce787d81b00dd3b |
| statistics/ |