type: position_score
table:
  filename: ENCFF989JUA.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR492ZIW
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR492ZIW [TISSUE: Homo sapiens thyroid gland tissue male adult
    (54 years), TARGET: CTCF]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: male adult (54 years)


    **output\_type**: pseudoreplicated IDR thresholded peaks


    **audit\_internal\_action**: File {ENCFF989JUA|/files/ENCFF989JUA/} with status
    ''released'' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status
    ''archived''.


    **audit\_internal\_action**: Archived analysis {ENCAN084SWQ|/analyses/ENCAN084SWQ/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_warning**: Processed alignments file {ENCFF867AMO|/files/ENCFF867AMO/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19910338 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    CTCF-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR492ZIW
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: male adult (54 years)
    biosample_summary: Homo sapiens thyroid gland tissue male adult (54 years)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/tissue_UBERON_0002046/
    perturbed: false
    doi: 10.17989/ENCSR492ZIW
    date_created: '2016-10-26T01:39:38.398475+00:00'
    date_released: '2016-11-07'
    submitter_comment: ''
    target: CTCF
