TF_ChIP-seq_ENCSR492LTS
TF_ChIP-seq ENCSR492LTS [biosample_summary="Homo sapiens K562" and target="BCLAF1"]
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| Id: | TF_ChIP-seq/ENCSR492LTS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR492LTS [biosamplesummary="Homo sapiens K562" and target="BCLAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN022SMW|/analyses/ENCAN022SMW/} has in progress subobject document {dba8a562-885f-42fa-b34f-82cedc72d60a|/documents/dba8a562-885f-42fa-b34f-82cedc72d60a/} audit_internal_action: Released analysis {ENCAN022SMW|/analyses/ENCAN022SMW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF725BZC|/files/ENCFF725BZC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19273245 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BCLAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF725JXZ|/files/ENCFF725JXZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.75 and a self consistency ratio of 2.09. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR492LTS | float |
TF_ChIP-seq_ENCSR492LTS |
TF_ChIP-seq ENCSR492LTS [biosample_summary="Homo sapiens K562" and target="BCLAF1"]
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[10.4, 2.04e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF725JXZ.bed.gz | 37.94 KB | e78830833b47435635ee80b2cfea1442 |
| ENCFF725JXZ.bed.gz.dvc | 99.0 B | e770a2cea55edb0ff1a8098bbaf63426 |
| ENCFF725JXZ.tabix.bed.gz | 24.48 KB | af9394e988fb5373eb7c986182234a8b |
| ENCFF725JXZ.tabix.bed.gz.dvc | 105.0 B | 819291e3566a3b7dd9d34eb94ad75595 |
| ENCFF725JXZ.tabix.bed.gz.tbi | 19.2 KB | 1da26eaa4380c08d1f48344c1b518dc1 |
| ENCFF725JXZ.tabix.bed.gz.tbi.dvc | 109.0 B | 6eed2b5fa2d877f966f2c5939653e0b2 |
| genomic_resource.yaml | 2.6 KB | e7a2ccc87850b74df74486ec63ab3ec5 |
| genomic_resource_original.yaml | 2.51 KB | 8dd3abc9ac692e29a918dc87ebb1e711 |
| statistics/ |