TF_ChIP-seq_ENCSR488ZNK
TF_ChIP-seq ENCSR488ZNK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF646" and target="ZNF646"]
×
| Id: | TF_ChIP-seq/ENCSR488ZNK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR488ZNK [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF646" and target="ZNF646"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF646 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN907NOX|/analyses/ENCAN907NOX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF515FHM|/files/ENCFF515FHM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF515FHM|/files/ENCFF515FHM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.91. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF307AOU|/files/ENCFF307AOU/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF307AOU|/files/ENCFF307AOU/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.74. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR488ZNK | float |
TF_ChIP-seq_ENCSR488ZNK |
TF_ChIP-seq ENCSR488ZNK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF646" and target="ZNF646"]
|
|
[10.3, 597] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF496HIK.bed.gz | 208.57 KB | e6e57c54bb60102d8bbc7ad9487247a2 |
| ENCFF496HIK.bed.gz.dvc | 100.0 B | b6791f64aa5420dfa63de9070bfbf15d |
| ENCFF496HIK.tabix.bed.gz | 158.9 KB | 326a7ffd48dfac496598223c3ba5f010 |
| ENCFF496HIK.tabix.bed.gz.dvc | 106.0 B | bc2827ae25093717be41bf45353bcc73 |
| ENCFF496HIK.tabix.bed.gz.tbi | 75.96 KB | b59df8a717004bdc1248278a34efe2d4 |
| ENCFF496HIK.tabix.bed.gz.tbi.dvc | 109.0 B | 8164afca5aa02d41931e3410fa3babea |
| genomic_resource.yaml | 4.24 KB | 5162d3db0b3b56f6dfc4f54c5fbc1b21 |
| genomic_resource_original.yaml | 4.07 KB | 419b5ec5938b24c15245291f9194278b |
| statistics/ |