TF_ChIP-seq_ENCSR481YWD
TF_ChIP-seq ENCSR481YWD [biosample_summary="Homo sapiens A549" and target="SMC3"]
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| Id: | TF_ChIP-seq/ENCSR481YWD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR481YWD [biosamplesummary="Homo sapiens A549" and target="SMC3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN887PYW|/analyses/ENCAN887PYW/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF256LDD|/files/ENCFF256LDD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF677VYD|/files/ENCFF677VYD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18366699 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SMC3-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF497RWM|/files/ENCFF497RWM/}, {ENCFF256LDD|/files/ENCFF256LDD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 3.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF994CKX|/files/ENCFF994CKX/}, {ENCFF786YYT|/files/ENCFF786YYT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 3.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR481YWD | float |
TF_ChIP-seq_ENCSR481YWD |
TF_ChIP-seq ENCSR481YWD [biosample_summary="Homo sapiens A549" and target="SMC3"]
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[4.84, 260] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF256LDD.bed.gz | 362.38 KB | 86452ef7a31a2a02091952e73594eff8 |
| ENCFF256LDD.bed.gz.dvc | 100.0 B | 013a961201d2d13840f3ba3c8882fb30 |
| ENCFF256LDD.tabix.bed.gz | 277.13 KB | cd914b173c58569fec6ffcfee8c6e280 |
| ENCFF256LDD.tabix.bed.gz.dvc | 106.0 B | fe3f96f9c9da81099490ece853c20f3f |
| ENCFF256LDD.tabix.bed.gz.tbi | 174.22 KB | 081f983b1b2d0589ed0c15f0218255f6 |
| ENCFF256LDD.tabix.bed.gz.tbi.dvc | 110.0 B | a87d6aafcfc6333b84c0edde0ed95a85 |
| genomic_resource.yaml | 3.15 KB | 8f51df68f40413b07a83610ce68f214a |
| genomic_resource_original.yaml | 3.06 KB | e439cd18bc6a4a006bb78609df390c38 |
| statistics/ |