TF_ChIP-seq_ENCSR479WQX
TF_ChIP-seq ENCSR479WQX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1" and target="GZF1"]
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| Id: | TF_ChIP-seq/ENCSR479WQX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR479WQX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1" and target="GZF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GZF1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN574WGP|/analyses/ENCAN574WGP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN574WGP|/analyses/ENCAN574WGP/} has in progress subobject document {8a8c401e-48ff-4815-8fd0-773ff4a210f6|/documents/8a8c401e-48ff-4815-8fd0-773ff4a210f6/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF611LYR|/files/ENCFF611LYR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF611LYR|/files/ENCFF611LYR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR479WQX | float |
TF_ChIP-seq_ENCSR479WQX |
TF_ChIP-seq ENCSR479WQX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1" and target="GZF1"]
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[10, 838] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF190LEQ.bed.gz | 181.04 KB | c88bcad60226f2aa599d1db0c5f284b6 |
| ENCFF190LEQ.bed.gz.dvc | 100.0 B | 41d4dfcb9c29d09262d5bf8563bb65ac |
| ENCFF190LEQ.tabix.bed.gz | 136.48 KB | 17cd698ce936c17771691462203baaa0 |
| ENCFF190LEQ.tabix.bed.gz.dvc | 106.0 B | a24aea0d97afd22a0c6083c145e7e5ea |
| ENCFF190LEQ.tabix.bed.gz.tbi | 65.61 KB | 3f818328d2d3ad2036b0dbd075823c2b |
| ENCFF190LEQ.tabix.bed.gz.tbi.dvc | 109.0 B | e79bbf0eb1e7fc64a60cb454fae43e5f |
| genomic_resource.yaml | 3.17 KB | 67edc5e93bb6b14c3e17be235bfd5546 |
| genomic_resource_original.yaml | 3.01 KB | 996a4a34607bc65d22d6b3483a8d35e6 |
| statistics/ |