TF_ChIP-seq_ENCSR479QAJ
TF_ChIP-seq ENCSR479QAJ [biosample_summary="Homo sapiens K562" and target="U2AF2"]
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| Id: | TF_ChIP-seq/ENCSR479QAJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR479QAJ [biosamplesummary="Homo sapiens K562" and target="U2AF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN705FMD|/analyses/ENCAN705FMD/} has in progress subobject document {9ee30646-15de-4714-9a19-7fa812d6fa3c|/documents/9ee30646-15de-4714-9a19-7fa812d6fa3c/} audit_internal_action: Released analysis {ENCAN705FMD|/analyses/ENCAN705FMD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF126YFU|/files/ENCFF126YFU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10140798 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting U2AF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF913GOO|/files/ENCFF913GOO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12628661 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting U2AF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF913GOO|/files/ENCFF913GOO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF913GOO|/files/ENCFF913GOO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR479QAJ | float |
TF_ChIP-seq_ENCSR479QAJ |
TF_ChIP-seq ENCSR479QAJ [biosample_summary="Homo sapiens K562" and target="U2AF2"]
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[4.46, 85.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF164CTH.bed.gz | 2.75 KB | 46409e1e68a34f12e062a26114cfae16 |
| ENCFF164CTH.bed.gz.dvc | 98.0 B | dcab0ae272b93f55fbcbf4f7d7c2c806 |
| ENCFF164CTH.tabix.bed.gz | 2.07 KB | b5cf3b5918c588e807fd504e914abab1 |
| ENCFF164CTH.tabix.bed.gz.dvc | 104.0 B | bf7643497977265c4e93dc2e5a3ed76c |
| ENCFF164CTH.tabix.bed.gz.tbi | 4.15 KB | 90936d32058b200fb5fe19bee2897601 |
| ENCFF164CTH.tabix.bed.gz.tbi.dvc | 108.0 B | d7edd873d15c48cfdca7aaedb703209c |
| genomic_resource.yaml | 3.89 KB | ae2c65c6120c794a24ba36317c001ec9 |
| genomic_resource_original.yaml | 3.79 KB | dc900e9029b659d0538504aa87d2852c |
| statistics/ |