TF_ChIP-seq_ENCSR479PRL
TF_ChIP-seq ENCSR479PRL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB4" and target="ZBTB4"]
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| Id: | TF_ChIP-seq/ENCSR479PRL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR479PRL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB4" and target="ZBTB4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN515NRX|/analyses/ENCAN515NRX/} has in progress subobject document {046b1969-ae4c-4220-929c-419f7c0f124d|/documents/046b1969-ae4c-4220-929c-419f7c0f124d/} audit_internal_action: Released analysis {ENCAN515NRX|/analyses/ENCAN515NRX/} has replaced subobject file {9703f916-3f13-49e0-afc5-8575578513e1|/files/9703f916-3f13-49e0-afc5-8575578513e1/} audit_internal_action: Released analysis {ENCAN515NRX|/analyses/ENCAN515NRX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN515NRX|/analyses/ENCAN515NRX/} has replaced subobject file {66c44e14-9edd-4e0d-b491-a73c5a57b82d|/files/66c44e14-9edd-4e0d-b491-a73c5a57b82d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF320NOF|/files/ENCFF320NOF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF320NOF|/files/ENCFF320NOF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.48. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF374HXP|/files/ENCFF374HXP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.67 and a self consistency ratio of 3.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF828GZH|/files/ENCFF828GZH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.67 and a self consistency ratio of 3.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR479PRL | float |
TF_ChIP-seq_ENCSR479PRL |
TF_ChIP-seq ENCSR479PRL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB4" and target="ZBTB4"]
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[11.9, 289] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF374HXP.bed.gz | 253.25 KB | 80698c7a22dee0809e0afb8bcd690c5b |
| ENCFF374HXP.bed.gz.dvc | 100.0 B | 48f711fff0e7f733fc9cbd861ad1f097 |
| ENCFF374HXP.tabix.bed.gz | 214.31 KB | e0ef3e91d95bbbcf0c498361becf83ef |
| ENCFF374HXP.tabix.bed.gz.dvc | 106.0 B | 02769d136cbfc46308d0753bb5bc148f |
| ENCFF374HXP.tabix.bed.gz.tbi | 85.74 KB | 777f928ea89cc772ebe90f52355d5108 |
| ENCFF374HXP.tabix.bed.gz.tbi.dvc | 109.0 B | 49bb84d39cfc185cc1c64d25dcb1b2f1 |
| genomic_resource.yaml | 4.62 KB | 9ed0f382007b9cf4d7654271a5ae2aef |
| genomic_resource_original.yaml | 4.46 KB | 09ceb4bf64b3b90afb16e69398c7b2a8 |
| statistics/ |