TF_ChIP-seq_ENCSR478ZYO
TF_ChIP-seq ENCSR478ZYO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBX2" and target="CBX2"]
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| Id: | TF_ChIP-seq/ENCSR478ZYO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR478ZYO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBX2" and target="CBX2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CBX2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN630HUW|/analyses/ENCAN630HUW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF830IMY|/files/ENCFF830IMY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 18279654 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CBX2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF830IMY|/files/ENCFF830IMY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF830IMY|/files/ENCFF830IMY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.95. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR478ZYO | float |
TF_ChIP-seq_ENCSR478ZYO |
TF_ChIP-seq ENCSR478ZYO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBX2" and target="CBX2"]
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[8.3, 199] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF241LPZ.bed.gz | 82.55 KB | b796ede92234cf5497e3b10486273daf |
| ENCFF241LPZ.bed.gz.dvc | 99.0 B | 46f29db71df7172b1d6ec11db1e6121a |
| ENCFF241LPZ.tabix.bed.gz | 58.81 KB | 1e9041b550f3e0a50e68698a8cbd03e5 |
| ENCFF241LPZ.tabix.bed.gz.dvc | 105.0 B | f8d4546ad2c2a648e17e8e357ecc9fca |
| ENCFF241LPZ.tabix.bed.gz.tbi | 36.89 KB | b30cf30b872c83a627da758a4b0905d9 |
| ENCFF241LPZ.tabix.bed.gz.tbi.dvc | 109.0 B | 8a9387bb996a8cb593a302d23c2b3c36 |
| genomic_resource.yaml | 3.44 KB | cdee098a39385d2070894015f8305cc2 |
| genomic_resource_original.yaml | 3.28 KB | 96e49231baa65f6b8f9e16f7d396156c |
| statistics/ |