| Id: | TF_ChIP-seq/ENCSR478SKI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR478SKI [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D1" and target="TSC22D1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN064WDX|/analyses/ENCAN064WDX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF521RKI|/files/ENCFF521RKI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF521RKI|/files/ENCFF521RKI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.31. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF308ZGY|/files/ENCFF308ZGY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF308ZGY|/files/ENCFF308ZGY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.00. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR478SKI | float |
TF_ChIP-seq_ENCSR478SKI |
TF_ChIP-seq ENCSR478SKI [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D1" and target="TSC22D1"]
|
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[11.1, 394] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF670KBU.bed.gz | 105.91 KB | 35509b67626f15f83dc3c8bad6a9aff7 |
| ENCFF670KBU.bed.gz.dvc | 100.0 B | 00e7d9f29f11ab5adc7798787c02f733 |
| ENCFF670KBU.tabix.bed.gz | 76.1 KB | 4a37750f675cd86d5f2b528b5df70214 |
| ENCFF670KBU.tabix.bed.gz.dvc | 105.0 B | 38202197ee5b06996f64c41663a994b3 |
| ENCFF670KBU.tabix.bed.gz.tbi | 44.86 KB | b207f62aa6ee086d726d4fa710ff1fac |
| ENCFF670KBU.tabix.bed.gz.tbi.dvc | 109.0 B | 35bddb1c20496e247d73dedeb54f1665 |
| genomic_resource.yaml | 4.25 KB | c019e95ddb89d50f56dd8f180b226638 |
| genomic_resource_original.yaml | 4.08 KB | 25e71e45fd7579a8c5c9fa8933a23b52 |
| statistics/ |