TF_ChIP-seq_ENCSR475ZYA
TF_ChIP-seq ENCSR475ZYA [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens OTX1" and target="OTX1"]
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| Id: | TF_ChIP-seq/ENCSR475ZYA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR475ZYA [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens OTX1" and target="OTX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens OTX1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN216USD|/analyses/ENCAN216USD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF595RCM|/files/ENCFF595RCM/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF595RCM|/files/ENCFF595RCM/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF227JBK|/files/ENCFF227JBK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF227JBK|/files/ENCFF227JBK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR475ZYA | float |
TF_ChIP-seq_ENCSR475ZYA |
TF_ChIP-seq ENCSR475ZYA [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens OTX1" and target="OTX1"]
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[21.4, 1.78e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF245JPK.bed.gz | 195.43 KB | 4794b76867d86d317e5886d5c850f9c2 |
| ENCFF245JPK.bed.gz.dvc | 100.0 B | 425ce94e374bb76970f09c77d3e1449e |
| ENCFF245JPK.tabix.bed.gz | 128.67 KB | 7055790c3dfca7bda42e786d5e6b9b3a |
| ENCFF245JPK.tabix.bed.gz.dvc | 106.0 B | 14820cbb0ac46c3b43a86c73ce24ed85 |
| ENCFF245JPK.tabix.bed.gz.tbi | 75.45 KB | 0a99c1b201376fbeab92a4817680cae6 |
| ENCFF245JPK.tabix.bed.gz.tbi.dvc | 109.0 B | 17726251bf62fb2a077c0a0bed374d72 |
| genomic_resource.yaml | 4.22 KB | 9be8307630e2cc2fee0b45107555287e |
| genomic_resource_original.yaml | 4.06 KB | cbea15ea018cf9c30b6556d03127e6f9 |
| statistics/ |