TF_ChIP-seq_ENCSR475ZGL
TF_ChIP-seq ENCSR475ZGL [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MLX" and target="MLX"]
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| Id: | TF_ChIP-seq/ENCSR475ZGL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR475ZGL [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MLX" and target="MLX"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MLX output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN021UBB|/analyses/ENCAN021UBB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF396HLC|/files/ENCFF396HLC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF396HLC|/files/ENCFF396HLC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.37. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF913UUO|/files/ENCFF913UUO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF913UUO|/files/ENCFF913UUO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.10. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR475ZGL | float |
TF_ChIP-seq_ENCSR475ZGL |
TF_ChIP-seq ENCSR475ZGL [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MLX" and target="MLX"]
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[8.28, 653] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF128YWS.bed.gz | 60.29 KB | 24350c498e752e86a49b43b8e002c0d5 |
| ENCFF128YWS.bed.gz.dvc | 99.0 B | 1e44b08756901ed622675684c164cde2 |
| ENCFF128YWS.tabix.bed.gz | 43.04 KB | a5267829f34d67dfb944f6c51cfa3133 |
| ENCFF128YWS.tabix.bed.gz.dvc | 105.0 B | d68d2115d941bfdc01a660e949510ba7 |
| ENCFF128YWS.tabix.bed.gz.tbi | 23.79 KB | 2601acab67132ce72e78993eb12679e7 |
| ENCFF128YWS.tabix.bed.gz.tbi.dvc | 109.0 B | 39f91651487b7c82dc99c17b4efa6f76 |
| genomic_resource.yaml | 4.22 KB | 785a42dd1cd9158062567bd3fc9ded03 |
| genomic_resource_original.yaml | 4.07 KB | 1cec8b412091111d11e5362ead624067 |
| statistics/ |