TF_ChIP-seq_ENCSR473DVS
TF_ChIP-seq ENCSR473DVS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (40 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR473DVS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR473DVS [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (40 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN748TDI|/analyses/ENCAN748TDI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF927FHI|/files/ENCFF927FHI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF927FHI|/files/ENCFF927FHI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR473DVS | float |
TF_ChIP-seq_ENCSR473DVS |
TF_ChIP-seq ENCSR473DVS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (40 years)" and target="CTCF"]
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[5.23, 223] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF167QRJ.bed.gz | 365.45 KB | 4fb023c73a81e1d6ee1abaff622ef87c |
| ENCFF167QRJ.bed.gz.dvc | 100.0 B | 316cda58a3dfc2b2b29a4839506b54d1 |
| ENCFF167QRJ.tabix.bed.gz | 293.79 KB | beef1d4cea659fb6d95f71827f951e96 |
| ENCFF167QRJ.tabix.bed.gz.dvc | 106.0 B | 83201cf31c925609e8723c708f45fd99 |
| ENCFF167QRJ.tabix.bed.gz.tbi | 171.61 KB | 9b817c3510fea6dd88847a33b2ba9964 |
| ENCFF167QRJ.tabix.bed.gz.tbi.dvc | 110.0 B | fcaa39ae97dc9b0ef012c2cf4109ddd3 |
| genomic_resource.yaml | 2.76 KB | 80926cb7b6a2942829a95f6ac3c60a57 |
| genomic_resource_original.yaml | 2.63 KB | be43406b246f66f74b78b1df050c374d |
| statistics/ |