TF_ChIP-seq_ENCSR470KCE
TF_ChIP-seq ENCSR470KCE [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (20 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR470KCE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR470KCE [biosamplesummary="Homo sapiens CD4-positive, alpha-beta T cell male adult (20 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (20 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN474TKD|/analyses/ENCAN474TKD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF749LNR|/files/ENCFF749LNR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF749LNR|/files/ENCFF749LNR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR470KCE | float |
TF_ChIP-seq_ENCSR470KCE |
TF_ChIP-seq ENCSR470KCE [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (20 years)" and target="CTCF"]
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[7.78, 289] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF858TLX.bed.gz | 660.99 KB | 8d3b0155d380a141394f52c9ccbb244c |
| ENCFF858TLX.bed.gz.dvc | 100.0 B | a0e64e6ceabd1efa7900a716e94d1252 |
| ENCFF858TLX.tabix.bed.gz | 600.28 KB | 3496e0fcb14a4720e906deb49b541cad |
| ENCFF858TLX.tabix.bed.gz.dvc | 106.0 B | 4d5ecb7910891ec689425955bb02f600 |
| ENCFF858TLX.tabix.bed.gz.tbi | 195.38 KB | c9c12bcf4a0f79ed8523af4cf162350f |
| ENCFF858TLX.tabix.bed.gz.tbi.dvc | 110.0 B | 8961ca6fd540efed734a1448420ff4f6 |
| genomic_resource.yaml | 2.78 KB | 0adcbb490ef9e0da7d589d4d1d47a8f3 |
| genomic_resource_original.yaml | 2.64 KB | f69f69678d4cf7efe9e656a61fad3c8d |
| statistics/ |