TF_ChIP-seq_ENCSR467EQP
TF_ChIP-seq ENCSR467EQP [biosample_summary="Homo sapiens brain organoid, 90 days post differentiation" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR467EQP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR467EQP [biosamplesummary="Homo sapiens brain organoid, 90 days post differentiation" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: brain organoid 90 days post differentiation output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN338AIU|/analyses/ENCAN338AIU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF983GYX|/files/ENCFF983GYX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF983GYX|/files/ENCFF983GYX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR467EQP | float |
TF_ChIP-seq_ENCSR467EQP |
TF_ChIP-seq ENCSR467EQP [biosample_summary="Homo sapiens brain organoid, 90 days post differentiation" and target="CTCF"]
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[8.27, 858] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF791OWQ.bed.gz | 804.85 KB | b5a1970ddd2b5d6f1c8c34d4ca3371ea |
| ENCFF791OWQ.bed.gz.dvc | 100.0 B | 7ba2fb79e542197bba2cd2309f4cee77 |
| ENCFF791OWQ.tabix.bed.gz | 602.82 KB | 2416145149a682166e5567f5c2b9acee |
| ENCFF791OWQ.tabix.bed.gz.dvc | 106.0 B | 5fec482ccdaf4f4448e681205f6f4b9d |
| ENCFF791OWQ.tabix.bed.gz.tbi | 237.15 KB | 45e14df7c9d99c4abc0fa2359d0b58d0 |
| ENCFF791OWQ.tabix.bed.gz.tbi.dvc | 110.0 B | 72fc4f2c3925238555196e919cb82621 |
| genomic_resource.yaml | 2.8 KB | 282c614b891060dfe0f7f9def66a9268 |
| genomic_resource_original.yaml | 2.67 KB | fafed7c46bec30f832f1bef8fa8ac5aa |
| statistics/ |