TF_ChIP-seq_ENCSR464DKE
TF_ChIP-seq ENCSR464DKE [biosample_summary="Homo sapiens Loucy" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR464DKE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR464DKE [biosamplesummary="Homo sapiens Loucy" and target="CTCF"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN469UGE|/analyses/ENCAN469UGE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF190HQN|/files/ENCFF190HQN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF190HQN|/files/ENCFF190HQN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.11. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR464DKE | float |
TF_ChIP-seq_ENCSR464DKE |
TF_ChIP-seq ENCSR464DKE [biosample_summary="Homo sapiens Loucy" and target="CTCF"]
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[6.34, 655] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF707BQD.bed.gz | 1.07 MB | 90846d0381b0275c4f335a367be1ff7f |
| ENCFF707BQD.bed.gz.dvc | 101.0 B | 49d0c128d2f37075390bc9d718974da0 |
| ENCFF707BQD.tabix.bed.gz | 813.57 KB | d45f59eb7c5dd6272bae052acfa002f8 |
| ENCFF707BQD.tabix.bed.gz.dvc | 106.0 B | cd99d15e54a3798fdef32a995f452e76 |
| ENCFF707BQD.tabix.bed.gz.tbi | 341.0 KB | de6f3415606f773f7c5f776c84f4e745 |
| ENCFF707BQD.tabix.bed.gz.tbi.dvc | 110.0 B | 54fd96b2e0d90fe8af811d0faf2d3ffa |
| genomic_resource.yaml | 2.7 KB | ae698da3f7b0f493afc49f638ea03e9f |
| genomic_resource_original.yaml | 2.61 KB | 06e447502d4320e78e818e194d04bb8a |
| statistics/ |