TF_ChIP-seq_ENCSR461VHZ
TF_ChIP-seq ENCSR461VHZ [biosample_summary="Homo sapiens astrocyte" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR461VHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR461VHZ [biosamplesummary="Homo sapiens astrocyte" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (53 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN440TFC|/analyses/ENCAN440TFC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF393OXB|/files/ENCFF393OXB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF393OXB|/files/ENCFF393OXB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR461VHZ | float |
TF_ChIP-seq_ENCSR461VHZ |
TF_ChIP-seq ENCSR461VHZ [biosample_summary="Homo sapiens astrocyte" and target="CTCF"]
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[5.1, 186] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF896MXI.bed.gz | 521.27 KB | adc6e14ce7bb0d1971759fc5bcbf526e |
| ENCFF896MXI.bed.gz.dvc | 100.0 B | d26116f53c72b044c288127c31341c60 |
| ENCFF896MXI.tabix.bed.gz | 459.62 KB | 21c9c2b22cee8185012f2f6e4b0068ee |
| ENCFF896MXI.tabix.bed.gz.dvc | 106.0 B | ae44ec3eb1a9fbdd61d5b9cc19322603 |
| ENCFF896MXI.tabix.bed.gz.tbi | 172.87 KB | 9987bb4c5f336d6abc7152740f5e0e1a |
| ENCFF896MXI.tabix.bed.gz.tbi.dvc | 110.0 B | 3231452a95b8e2a5c6419743da54568b |
| genomic_resource.yaml | 2.66 KB | 4d63b602a19fc0c207d221ad69cce528 |
| genomic_resource_original.yaml | 2.56 KB | 4d8b3ce79080175daf2d6a3d082e4bb1 |
| statistics/ |