TF_ChIP-seq_ENCSR461HOC
TF_ChIP-seq ENCSR461HOC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR461HOC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR461HOC [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN085AWX|/analyses/ENCAN085AWX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF827RKM|/files/ENCFF827RKM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF827RKM|/files/ENCFF827RKM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR461HOC | float |
TF_ChIP-seq_ENCSR461HOC |
TF_ChIP-seq ENCSR461HOC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="CTCF"]
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[4.47, 340] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF978LAN.bed.gz | 577.26 KB | 4ee58f072ba8f7b8235d0097be086300 |
| ENCFF978LAN.bed.gz.dvc | 100.0 B | bfe71a384b9f51b6c9dab00f6a0debd1 |
| ENCFF978LAN.tabix.bed.gz | 455.69 KB | 7cabcd903312e446176693a4d0a8decd |
| ENCFF978LAN.tabix.bed.gz.dvc | 106.0 B | 69f3ea424f9e748fa2e04c4b5284839e |
| ENCFF978LAN.tabix.bed.gz.tbi | 238.7 KB | 05658af56874b65ff5f2d508f4f3db67 |
| ENCFF978LAN.tabix.bed.gz.tbi.dvc | 110.0 B | 95a5bd50c3d1441bd7017f35dd9b3df7 |
| genomic_resource.yaml | 2.76 KB | d052e87c586ebba1c9d063ca15e89d0d |
| genomic_resource_original.yaml | 2.62 KB | 65cf80ad5a0378986f6551fcbf3e56b0 |
| statistics/ |