TF_ChIP-seq_ENCSR460LGH
TF_ChIP-seq ENCSR460LGH [biosample_summary="Homo sapiens C4-2B" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR460LGH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR460LGH [biosamplesummary="Homo sapiens C4-2B" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN784EEY|/analyses/ENCAN784EEY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN784EEY|/analyses/ENCAN784EEY/} has in progress subobject document {083e4201-0e5b-493f-96bc-77704ae564e8|/documents/083e4201-0e5b-493f-96bc-77704ae564e8/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF323JBE|/files/ENCFF323JBE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF323JBE|/files/ENCFF323JBE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.48. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR460LGH | float |
TF_ChIP-seq_ENCSR460LGH |
TF_ChIP-seq ENCSR460LGH [biosample_summary="Homo sapiens C4-2B" and target="CTCF"]
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[23.1, 6.5e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF700AVT.bed.gz | 1.56 MB | fc7d96f7936096dc253ffac00f3c93bd |
| ENCFF700AVT.bed.gz.dvc | 101.0 B | 682b003b9c4becdc2d6ad07f83a39bab |
| ENCFF700AVT.tabix.bed.gz | 838.24 KB | af5cf668c89b143e4c91ec67defe364a |
| ENCFF700AVT.tabix.bed.gz.dvc | 106.0 B | a577fc34943a8de6bc5b7f9c09ed9e95 |
| ENCFF700AVT.tabix.bed.gz.tbi | 326.09 KB | 49490335c233dcbe1f808cee31a563d5 |
| ENCFF700AVT.tabix.bed.gz.tbi.dvc | 110.0 B | 03347dd6575022a9b309d38b6a9164b4 |
| genomic_resource.yaml | 2.88 KB | d386ca7c02b663db56ccbefb4abcf059 |
| genomic_resource_original.yaml | 2.79 KB | c677a1be54d1a7bcf5d3ba1cde7606be |
| statistics/ |