TF_ChIP-seq_ENCSR459FUE
TF_ChIP-seq ENCSR459FUE [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF" and target="ERF"]
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| Id: | TF_ChIP-seq/ENCSR459FUE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR459FUE [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF" and target="ERF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ERF output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN841FVK|/analyses/ENCAN841FVK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN841FVK|/analyses/ENCAN841FVK/} has in progress subobject document {b9729abf-44c1-48be-b9c3-cb194c5ea02d|/documents/b9729abf-44c1-48be-b9c3-cb194c5ea02d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF419TRU|/files/ENCFF419TRU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF419TRU|/files/ENCFF419TRU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.45. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR459FUE | float |
TF_ChIP-seq_ENCSR459FUE |
TF_ChIP-seq ENCSR459FUE [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF" and target="ERF"]
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[15.5, 1.3e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF462ZIG.bed.gz | 181.14 KB | 4e1b78e6acd846952e4bf535b3c3ab63 |
| ENCFF462ZIG.bed.gz.dvc | 100.0 B | ac7f094861c8b562fe09b32a458c13d9 |
| ENCFF462ZIG.tabix.bed.gz | 125.26 KB | b49f342db00d9b1aec4a27d0ca543719 |
| ENCFF462ZIG.tabix.bed.gz.dvc | 106.0 B | 0b6a5f54ec90a6b83069792ec915b22d |
| ENCFF462ZIG.tabix.bed.gz.tbi | 67.46 KB | 2cf3634a278a3142b4d999cd5a668a43 |
| ENCFF462ZIG.tabix.bed.gz.tbi.dvc | 109.0 B | a871fd9687ad2c917592e80c8db2e3fb |
| genomic_resource.yaml | 3.16 KB | 27d4e402874a95021b74afa2116b5541 |
| genomic_resource_original.yaml | 3.0 KB | a604cc6779bd9dfc129c710be89740f3 |
| statistics/ |