TF_ChIP-seq_ENCSR458PYQ
TF_ChIP-seq ENCSR458PYQ [biosample_summary="Homo sapiens type B pancreatic cell" and target="CTCF"]
×
| Id: | TF_ChIP-seq/ENCSR458PYQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR458PYQ [biosamplesummary="Homo sapiens type B pancreatic cell" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN299YTJ|/analyses/ENCAN299YTJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF471IXP|/files/ENCFF471IXP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF471IXP|/files/ENCFF471IXP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.62. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR458PYQ | float |
TF_ChIP-seq_ENCSR458PYQ |
TF_ChIP-seq ENCSR458PYQ [biosample_summary="Homo sapiens type B pancreatic cell" and target="CTCF"]
|
|
[8.14, 816] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF190FKP.bed.gz | 1.35 MB | 571b8336b3057ea5604ccb4872114e58 |
| ENCFF190FKP.bed.gz.dvc | 101.0 B | 995d7c2a6924731a4b5060e587723f9c |
| ENCFF190FKP.tabix.bed.gz | 927.78 KB | 65cec64ced1debb09d344b73020e6e5c |
| ENCFF190FKP.tabix.bed.gz.dvc | 106.0 B | c68d598a065e35fbdd00051d580d99ff |
| ENCFF190FKP.tabix.bed.gz.tbi | 348.03 KB | 857f29a73767d950378626ec89cd4874 |
| ENCFF190FKP.tabix.bed.gz.tbi.dvc | 110.0 B | b1607cb1883029e40c65fe61e3e437d7 |
| genomic_resource.yaml | 2.71 KB | 123b2c1c20005c884a2e23d9c776b9fb |
| genomic_resource_original.yaml | 2.61 KB | 5256d7ca00424c86e15e6a704aa3e64d |
| statistics/ |