TF_ChIP-seq_ENCSR454SCH
TF_ChIP-seq ENCSR454SCH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7" and target="ZNF7"]
×
| Id: | TF_ChIP-seq/ENCSR454SCH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR454SCH [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7" and target="ZNF7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN243BKV|/analyses/ENCAN243BKV/} has in progress subobject document {a9615186-e68b-4004-93f2-6b9bcffe7ceb|/documents/a9615186-e68b-4004-93f2-6b9bcffe7ceb/} audit_internal_action: Released analysis {ENCAN243BKV|/analyses/ENCAN243BKV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF461ZGV|/files/ENCFF461ZGV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF461ZGV|/files/ENCFF461ZGV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.22. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF589NOE|/files/ENCFF589NOE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF589NOE|/files/ENCFF589NOE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.40. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR454SCH | float |
TF_ChIP-seq_ENCSR454SCH |
TF_ChIP-seq ENCSR454SCH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7" and target="ZNF7"]
|
|
[9.66, 775] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF018HWM.bed.gz | 265.31 KB | 6b2d6200fb0d99bdbd7924020419fcb7 |
| ENCFF018HWM.bed.gz.dvc | 100.0 B | 0185a09300665a1b04231bd3468963e0 |
| ENCFF018HWM.tabix.bed.gz | 198.55 KB | 31c0db98d3dbccf7be0feade3a96131d |
| ENCFF018HWM.tabix.bed.gz.dvc | 106.0 B | 67b3525cf072545bfb13ef3a833d5bfc |
| ENCFF018HWM.tabix.bed.gz.tbi | 99.79 KB | 679a4ebdc76d1129aee8dcd0d17c577e |
| ENCFF018HWM.tabix.bed.gz.tbi.dvc | 110.0 B | 1bb6d5ce7ca117ea1de48be3d75cd880 |
| genomic_resource.yaml | 4.43 KB | 72dbac4c2675ccb64aab0709e40ecdc8 |
| genomic_resource_original.yaml | 4.27 KB | 09143ca086260982f94f830f8c999ff5 |
| statistics/ |