TF_ChIP-seq_ENCSR454GVT
TF_ChIP-seq ENCSR454GVT [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2" and target="NR2C2"]
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| Id: | TF_ChIP-seq/ENCSR454GVT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR454GVT [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2" and target="NR2C2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN027PVG|/analyses/ENCAN027PVG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF501DEB|/files/ENCFF501DEB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF501DEB|/files/ENCFF501DEB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF047FKA|/files/ENCFF047FKA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF047FKA|/files/ENCFF047FKA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR454GVT | float |
TF_ChIP-seq_ENCSR454GVT |
TF_ChIP-seq ENCSR454GVT [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2" and target="NR2C2"]
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[9.93, 490] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF847UIM.bed.gz | 54.27 KB | d03d2e7149c02d831f97e5914a4364b7 |
| ENCFF847UIM.bed.gz.dvc | 99.0 B | cc0ce224bbf3f8ada09894d215e584a1 |
| ENCFF847UIM.tabix.bed.gz | 39.08 KB | 9fe05ac69225bc28d60d1566f607c76e |
| ENCFF847UIM.tabix.bed.gz.dvc | 105.0 B | 9553de0c75e12626949d41667700c397 |
| ENCFF847UIM.tabix.bed.gz.tbi | 30.58 KB | 41b38f917b865330f0d5aa85b6706620 |
| ENCFF847UIM.tabix.bed.gz.tbi.dvc | 109.0 B | f6fcb13a295494fcc0e02d6e4f38d647 |
| genomic_resource.yaml | 4.23 KB | 1e0acfdfbe5d0004d7a17ea8e607cb00 |
| genomic_resource_original.yaml | 4.07 KB | 2f4a58ca42d382b8f809c0346bbf3f46 |
| statistics/ |