TF_ChIP-seq_ENCSR452UFJ
TF_ChIP-seq ENCSR452UFJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SPEN" and target="SPEN"]
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| Id: | TF_ChIP-seq/ENCSR452UFJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR452UFJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SPEN" and target="SPEN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SPEN output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN358GMR|/analyses/ENCAN358GMR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN358GMR|/analyses/ENCAN358GMR/} has in progress subobject document {6390d42c-def9-4032-aa7b-0c4a02102967|/documents/6390d42c-def9-4032-aa7b-0c4a02102967/} audit_warning: Processed alignments file {ENCFF888JFW|/files/ENCFF888JFW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 18657691 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SPEN-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF519KEV|/files/ENCFF519KEV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF519KEV|/files/ENCFF519KEV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.04. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR452UFJ | float |
TF_ChIP-seq_ENCSR452UFJ |
TF_ChIP-seq ENCSR452UFJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SPEN" and target="SPEN"]
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[9.91, 426] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF198OOM.bed.gz | 459.67 KB | 5a03a8e368c92b2002ea2674b46c2e69 |
| ENCFF198OOM.bed.gz.dvc | 100.0 B | 2f3013ff56b375a12f38fe95948ab4e5 |
| ENCFF198OOM.tabix.bed.gz | 376.41 KB | e5790979d242c24a5bc0fb67f48ba007 |
| ENCFF198OOM.tabix.bed.gz.dvc | 106.0 B | df49a3906d35bdd95840bcf8b7ba330e |
| ENCFF198OOM.tabix.bed.gz.tbi | 137.63 KB | a353d9eb648e11d2e13a2e9c3494256f |
| ENCFF198OOM.tabix.bed.gz.tbi.dvc | 110.0 B | c5bf825bdbaf51dda9b11e3887e63b5b |
| genomic_resource.yaml | 3.65 KB | b390aef007592386dbdda9009660a0ea |
| genomic_resource_original.yaml | 3.49 KB | 4fa607d9bb5b7ffba1f194640af17325 |
| statistics/ |