TF_ChIP-seq_ENCSR448RAP
TF_ChIP-seq ENCSR448RAP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF552" and target="ZNF552"]
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| Id: | TF_ChIP-seq/ENCSR448RAP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR448RAP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF552" and target="ZNF552"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF552 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN819ZPR|/analyses/ENCAN819ZPR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF484YPQ|/files/ENCFF484YPQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF484YPQ|/files/ENCFF484YPQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.38. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF145RDF|/files/ENCFF145RDF/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF145RDF|/files/ENCFF145RDF/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.11. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF963QEL|/files/ENCFF963QEL/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 2.19. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR448RAP | float |
TF_ChIP-seq_ENCSR448RAP |
TF_ChIP-seq ENCSR448RAP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF552" and target="ZNF552"]
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[10.5, 454] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF963QEL.bed.gz | 152.59 KB | 78920efb61aed4509eb0f037e197c554 |
| ENCFF963QEL.bed.gz.dvc | 100.0 B | 4633514c99418adfa90f7719c5a982fb |
| ENCFF963QEL.tabix.bed.gz | 113.75 KB | 6980a4ae47de122c1ec4d28753fac761 |
| ENCFF963QEL.tabix.bed.gz.dvc | 106.0 B | e155eb5357d2173e4402d80c41ec147c |
| ENCFF963QEL.tabix.bed.gz.tbi | 60.49 KB | ee119a378dfa58521ff43dd879511797 |
| ENCFF963QEL.tabix.bed.gz.tbi.dvc | 109.0 B | 82b6b35b2f4913f6b727400baf3e4415 |
| genomic_resource.yaml | 4.76 KB | 46514bee222f5f1d55941a5715f8da08 |
| genomic_resource_original.yaml | 4.59 KB | 74febe29d56b73ffe2196152a223d1de |
| statistics/ |