TF_ChIP-seq_ENCSR445QRF
TF_ChIP-seq ENCSR445QRF [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="HNF4A"]
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| Id: | TF_ChIP-seq/ENCSR445QRF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR445QRF [biosamplesummary="Homo sapiens liver tissue female child (4 years)" and target="HNF4A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (4 years) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN914YDV|/analyses/ENCAN914YDV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF837QHJ|/files/ENCFF837QHJ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF058OZQ|/files/ENCFF058OZQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF058OZQ|/files/ENCFF058OZQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.60. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF658AIS|/files/ENCFF658AIS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF658AIS|/files/ENCFF658AIS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR445QRF | float |
TF_ChIP-seq_ENCSR445QRF |
TF_ChIP-seq ENCSR445QRF [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="HNF4A"]
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[6.05, 928] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF837QHJ.bed.gz | 1.11 MB | 88e740cf796432bbac51385b15ea8d76 |
| ENCFF837QHJ.bed.gz.dvc | 101.0 B | 5293a97f7e732de8e08382c89af49f43 |
| ENCFF837QHJ.tabix.bed.gz | 818.37 KB | bb911487fa34cffc13aa0e3a12d1a5a2 |
| ENCFF837QHJ.tabix.bed.gz.dvc | 106.0 B | 2ba57e2caa618f2828837113519c95d0 |
| ENCFF837QHJ.tabix.bed.gz.tbi | 303.38 KB | bfd476a1d556e04c9d3c5c7799448427 |
| ENCFF837QHJ.tabix.bed.gz.tbi.dvc | 110.0 B | 09b0d5df27296f4c7d47d4d94b08ecb3 |
| genomic_resource.yaml | 4.51 KB | f6c991150044d7bf00e34f266beb39c2 |
| genomic_resource_original.yaml | 4.38 KB | 60db25e67a3e771faf8041d590f33568 |
| statistics/ |