TF_ChIP-seq_ENCSR444MSK
TF_ChIP-seq ENCSR444MSK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RFX7" and target="RFX7"]
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| Id: | TF_ChIP-seq/ENCSR444MSK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR444MSK [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RFX7" and target="RFX7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RFX7 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN468URL|/analyses/ENCAN468URL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF794AFK|/files/ENCFF794AFK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF794AFK|/files/ENCFF794AFK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.99. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR444MSK | float |
TF_ChIP-seq_ENCSR444MSK |
TF_ChIP-seq ENCSR444MSK [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RFX7" and target="RFX7"]
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[15.5, 845] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF774NZZ.bed.gz | 31.76 KB | a83ff9184d3998c0c9b53025520397af |
| ENCFF774NZZ.bed.gz.dvc | 99.0 B | 6f5ef8359ed8488cbb098d431be427f8 |
| ENCFF774NZZ.tabix.bed.gz | 20.05 KB | 38c9ada1315b26d54789f4e14ab9d13a |
| ENCFF774NZZ.tabix.bed.gz.dvc | 105.0 B | d76e0d1bf281224116144b9b53aedb66 |
| ENCFF774NZZ.tabix.bed.gz.tbi | 17.93 KB | 544d6de343cd19e107bcf09bc3c35e7e |
| ENCFF774NZZ.tabix.bed.gz.tbi.dvc | 109.0 B | 11c763b4026f9e92341add13bf4a11da |
| genomic_resource.yaml | 2.95 KB | 8024bafa1e2f6be6ae527e23a77c52a6 |
| genomic_resource_original.yaml | 2.79 KB | 169a285592034cde83f09cca8330338a |
| statistics/ |