TF_ChIP-seq_ENCSR444BFV
TF_ChIP-seq ENCSR444BFV [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF532" and target="ZNF532"]
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| Id: | TF_ChIP-seq/ENCSR444BFV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR444BFV [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF532" and target="ZNF532"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF532 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN824RVP|/analyses/ENCAN824RVP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF981XMN|/files/ENCFF981XMN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF981XMN|/files/ENCFF981XMN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.51. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF870JQT|/files/ENCFF870JQT/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF870JQT|/files/ENCFF870JQT/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.62. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF795EGN|/files/ENCFF795EGN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR444BFV | float |
TF_ChIP-seq_ENCSR444BFV |
TF_ChIP-seq ENCSR444BFV [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF532" and target="ZNF532"]
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[15.4, 1.16e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF795EGN.bed.gz | 60.57 KB | 17f8b94811badbee0a45d7e29b4dca41 |
| ENCFF795EGN.bed.gz.dvc | 99.0 B | be8622acae973c3d138dc7fdf2ee4b97 |
| ENCFF795EGN.tabix.bed.gz | 38.84 KB | 9c3e196e9e6fd8d3ea59e33f64eca78e |
| ENCFF795EGN.tabix.bed.gz.dvc | 105.0 B | 2c1f2ebb4721f0985c9d490432d1bf9b |
| ENCFF795EGN.tabix.bed.gz.tbi | 30.0 KB | 6fd4a09503557140227e77256fa26455 |
| ENCFF795EGN.tabix.bed.gz.tbi.dvc | 109.0 B | 1dd56b7846de7deb3bd5adc851317d7e |
| genomic_resource.yaml | 4.76 KB | 55be0034a83927b11792afd576548c54 |
| genomic_resource_original.yaml | 4.59 KB | e0100ba7b4948174791ea5a57eb6e0b1 |
| statistics/ |