TF_ChIP-seq_ENCSR443YTB
TF_ChIP-seq ENCSR443YTB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PROX1" and target="PROX1"]
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| Id: | TF_ChIP-seq/ENCSR443YTB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR443YTB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PROX1" and target="PROX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PROX1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN494GJK|/analyses/ENCAN494GJK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF120ZFX|/files/ENCFF120ZFX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF120ZFX|/files/ENCFF120ZFX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF929QSK|/files/ENCFF929QSK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF929QSK|/files/ENCFF929QSK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR443YTB | float |
TF_ChIP-seq_ENCSR443YTB |
TF_ChIP-seq ENCSR443YTB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PROX1" and target="PROX1"]
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[9.95, 563] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF162YBD.bed.gz | 553.15 KB | e3bcffcbcd914107770d14c3cbce27b6 |
| ENCFF162YBD.bed.gz.dvc | 100.0 B | 8f94e24bd7e82611d0f2521cf2ce04f5 |
| ENCFF162YBD.tabix.bed.gz | 416.74 KB | 4d929a9a769077115e5171c1114a7a25 |
| ENCFF162YBD.tabix.bed.gz.dvc | 106.0 B | 33f58d89f2ddd81477924db07d766eec |
| ENCFF162YBD.tabix.bed.gz.tbi | 155.09 KB | c009cfc0045842f96ba3a7f5752ffd51 |
| ENCFF162YBD.tabix.bed.gz.tbi.dvc | 110.0 B | acc6a95a4a928b15284dee39a3b66813 |
| genomic_resource.yaml | 4.23 KB | 9ed19cbf2000871275ba5a5326a93eda |
| genomic_resource_original.yaml | 4.07 KB | 3bd57f5035c595350c620d97b0de5d97 |
| statistics/ |