TF_ChIP-seq_ENCSR442CIF
TF_ChIP-seq ENCSR442CIF [biosample_summary="Homo sapiens prostate gland tissue male adult (54 years)" and target="POLR2AphosphoS5"]
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| Id: | TF_ChIP-seq/ENCSR442CIF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR442CIF [biosamplesummary="Homo sapiens prostate gland tissue male adult (54 years)" and target="POLR2AphosphoS5"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN945WII|/analyses/ENCAN945WII/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF756KIZ|/files/ENCFF756KIZ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline has 19032814 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2AphosphoS5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF756KIZ|/files/ENCFF756KIZ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF756KIZ|/files/ENCFF756KIZ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.45. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR442CIF | float |
TF_ChIP-seq_ENCSR442CIF |
TF_ChIP-seq ENCSR442CIF [biosample_summary="Homo sapiens prostate gland tissue male adult (54 years)" and target="POLR2AphosphoS5"]
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[7.1, 285] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF696QPX.bed.gz | 434.27 KB | 1bfe26d3156106940a45927938eae99b |
| ENCFF696QPX.bed.gz.dvc | 100.0 B | 3de91a975bea878f905a79598fd5e65a |
| ENCFF696QPX.tabix.bed.gz | 343.21 KB | 95d7a4a04894d99d0b19e9c076e029aa |
| ENCFF696QPX.tabix.bed.gz.dvc | 106.0 B | f8a5968b0bd7c4f83ba9f5dcdbb4bf2a |
| ENCFF696QPX.tabix.bed.gz.tbi | 153.0 KB | afc8a3d8ab2fc84c560ed2548629250d |
| ENCFF696QPX.tabix.bed.gz.tbi.dvc | 110.0 B | 15800208bd6d0cf3862bc9b48eabfe85 |
| genomic_resource.yaml | 3.39 KB | f5ced44ed62649c5ea3b29cb28ba332c |
| genomic_resource_original.yaml | 3.25 KB | 2972ef38e2bf2deb06a1bfdf5f615bad |
| statistics/ |