TF_ChIP-seq_ENCSR441VHN
TF_ChIP-seq ENCSR441VHN [biosample_summary="Homo sapiens GM12878" and target="IKZF1"]
×
| Id: | TF_ChIP-seq/ENCSR441VHN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR441VHN [biosamplesummary="Homo sapiens GM12878" and target="IKZF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN117YAT|/analyses/ENCAN117YAT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF032EMH|/files/ENCFF032EMH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF032EMH|/files/ENCFF032EMH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.95. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF566BBU|/files/ENCFF566BBU/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF566BBU|/files/ENCFF566BBU/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.61. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR441VHN | float |
TF_ChIP-seq_ENCSR441VHN |
TF_ChIP-seq ENCSR441VHN [biosample_summary="Homo sapiens GM12878" and target="IKZF1"]
|
|
[16.3, 8.33e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF809OOE.bed.gz | 1.19 MB | 9dc6f420639e0a265f3f179b6b42713a |
| ENCFF809OOE.bed.gz.dvc | 101.0 B | 10f1c5c42f03eab47f3b4318c2d8d27a |
| ENCFF809OOE.tabix.bed.gz | 808.13 KB | 2e2207fe8d2a7fd341717d7fbf1ee75d |
| ENCFF809OOE.tabix.bed.gz.dvc | 106.0 B | f4dfc6720a1eb2b0a8661c5cdbb077e8 |
| ENCFF809OOE.tabix.bed.gz.tbi | 246.86 KB | 3c24db5e84d1c43a758f7f17d79f24d1 |
| ENCFF809OOE.tabix.bed.gz.tbi.dvc | 110.0 B | 21b4ac3844b1b8e8a87ca33c59887cd3 |
| genomic_resource.yaml | 3.95 KB | 37e98a666e9fc7fa1eaf8a0b42df9475 |
| genomic_resource_original.yaml | 3.85 KB | 63b2113064829b3e26a233daf0030c3f |
| statistics/ |