TF_ChIP-seq_ENCSR441KFW
TF_ChIP-seq ENCSR441KFW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD4" and target="MXD4"]
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| Id: | TF_ChIP-seq/ENCSR441KFW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR441KFW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD4" and target="MXD4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MXD4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN099DYN|/analyses/ENCAN099DYN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN099DYN|/analyses/ENCAN099DYN/} has in progress subobject document {801cbbbb-3817-4ad1-86bf-50c25ca549e4|/documents/801cbbbb-3817-4ad1-86bf-50c25ca549e4/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF721ZCX|/files/ENCFF721ZCX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF721ZCX|/files/ENCFF721ZCX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR441KFW | float |
TF_ChIP-seq_ENCSR441KFW |
TF_ChIP-seq ENCSR441KFW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD4" and target="MXD4"]
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[9.02, 499] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF882JOB.bed.gz | 354.8 KB | 4a20d1c443cf1c9efb4208c6d3783dde |
| ENCFF882JOB.bed.gz.dvc | 100.0 B | 00f2c4502de7e97569c6ea2a273724c7 |
| ENCFF882JOB.tabix.bed.gz | 281.24 KB | 79f97a955d84bb81722cf3bd27f05c6e |
| ENCFF882JOB.tabix.bed.gz.dvc | 106.0 B | 760dc19f46084f082b8e465223a14da5 |
| ENCFF882JOB.tabix.bed.gz.tbi | 114.82 KB | 8f2fd01d6700794cc0e7350ba4e99f11 |
| ENCFF882JOB.tabix.bed.gz.tbi.dvc | 110.0 B | b188e124eab7d682bd1eb181f24cd9d1 |
| genomic_resource.yaml | 3.17 KB | 6695805705f3cd7acdd5b0588fe85df4 |
| genomic_resource_original.yaml | 3.01 KB | 5b74b450ad5f5ae12fe8632c5af4711c |
| statistics/ |