TF_ChIP-seq_ENCSR440UPD
TF_ChIP-seq ENCSR440UPD [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EMX1" and target="EMX1"]
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| Id: | TF_ChIP-seq/ENCSR440UPD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR440UPD [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EMX1" and target="EMX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens EMX1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN545RIP|/analyses/ENCAN545RIP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF377JAS|/files/ENCFF377JAS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF377JAS|/files/ENCFF377JAS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.62. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF344DND|/files/ENCFF344DND/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF344DND|/files/ENCFF344DND/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR440UPD | float |
TF_ChIP-seq_ENCSR440UPD |
TF_ChIP-seq ENCSR440UPD [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EMX1" and target="EMX1"]
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[14.1, 2.07e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF149LMA.bed.gz | 76.24 KB | ff3f1173cbb5168c7a805d9e2bdbc3c5 |
| ENCFF149LMA.bed.gz.dvc | 99.0 B | 09e4f1c70a352e0dfac1502d02a3f766 |
| ENCFF149LMA.tabix.bed.gz | 53.95 KB | ea138e7cbbf696ade03794ec88ac8294 |
| ENCFF149LMA.tabix.bed.gz.dvc | 105.0 B | 109e2534d0a2442a45a78f361c995410 |
| ENCFF149LMA.tabix.bed.gz.tbi | 30.87 KB | 77fce3a975cc4d43e8f3d391dc59d4e2 |
| ENCFF149LMA.tabix.bed.gz.tbi.dvc | 109.0 B | 91326280c002a61df756aca92f9be3bc |
| genomic_resource.yaml | 4.22 KB | 719857568e16cd1aee5b6577d0920731 |
| genomic_resource_original.yaml | 4.06 KB | 10b6810c0e62e6c4b46df696917aedc1 |
| statistics/ |