| Id: | TF_ChIP-seq/ENCSR440OJH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR440OJH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FLYWCH1" and target="FLYWCH1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FLYWCH1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN219TXF|/analyses/ENCAN219TXF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF102MUG|/files/ENCFF102MUG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF102MUG|/files/ENCFF102MUG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.26. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF738TPF|/files/ENCFF738TPF/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF738TPF|/files/ENCFF738TPF/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.64. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR440OJH | float |
TF_ChIP-seq_ENCSR440OJH |
TF_ChIP-seq ENCSR440OJH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FLYWCH1" and target="FLYWCH1"]
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[11, 530] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF245TLY.bed.gz | 76.53 KB | 18d28677861820b1ac7567464a125711 |
| ENCFF245TLY.bed.gz.dvc | 99.0 B | e6ddd755cdc468782c3365332d5388f1 |
| ENCFF245TLY.tabix.bed.gz | 55.52 KB | 39f4d0d446f120313727a3a9355c31af |
| ENCFF245TLY.tabix.bed.gz.dvc | 105.0 B | c9d6132cd6eb5b7ed4ab2cd5974162d2 |
| ENCFF245TLY.tabix.bed.gz.tbi | 35.01 KB | b10e619c7b2196085cf8ce878a2a77a4 |
| ENCFF245TLY.tabix.bed.gz.tbi.dvc | 109.0 B | e2d8b65361e9135c61b7e5c7ea9a4842 |
| genomic_resource.yaml | 4.25 KB | dea327c1f5ed9f883edf3e3706d88889 |
| genomic_resource_original.yaml | 4.08 KB | 76894c2d6e77d56973f1f9165d6d61b3 |
| statistics/ |