TF_ChIP-seq_ENCSR439WAF
TF_ChIP-seq ENCSR439WAF [biosample_summary="Homo sapiens GM12878" and target="E4F1"]
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| Id: | TF_ChIP-seq/ENCSR439WAF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR439WAF [biosamplesummary="Homo sapiens GM12878" and target="E4F1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN273KUP|/analyses/ENCAN273KUP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF225FNQ|/files/ENCFF225FNQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF225FNQ|/files/ENCFF225FNQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR439WAF | float |
TF_ChIP-seq_ENCSR439WAF |
TF_ChIP-seq ENCSR439WAF [biosample_summary="Homo sapiens GM12878" and target="E4F1"]
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[11.7, 7.77e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF711OSR.bed.gz | 107.49 KB | f1f2426bc50072ce5eede047ee65a239 |
| ENCFF711OSR.bed.gz.dvc | 100.0 B | 6a5cd4628570b5abb70490f9fdeb4a9a |
| ENCFF711OSR.tabix.bed.gz | 80.16 KB | 4c73477dc6141ef51b2b6276c8397c0b |
| ENCFF711OSR.tabix.bed.gz.dvc | 105.0 B | a26628420438b7ebfb850ebbabc3e544 |
| ENCFF711OSR.tabix.bed.gz.tbi | 55.15 KB | 97bf41cf2577e06b15cbe82019d2a2bc |
| ENCFF711OSR.tabix.bed.gz.tbi.dvc | 109.0 B | d4a91ca79a492a850849ad564357ea08 |
| genomic_resource.yaml | 3.33 KB | 2b6f8f30203fd662609a8c70a91b908b |
| genomic_resource_original.yaml | 3.24 KB | f6c5e63db9898ef7ae109d7471c8bc3b |
| statistics/ |