TF_ChIP-seq_ENCSR439OCL
TF_ChIP-seq ENCSR439OCL [biosample_summary="Homo sapiens K562" and target="ZNF407"]
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| Id: | TF_ChIP-seq/ENCSR439OCL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR439OCL [biosamplesummary="Homo sapiens K562" and target="ZNF407"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN281KRF|/analyses/ENCAN281KRF/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF778YDK|/files/ENCFF778YDK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17835759 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF407-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF778YDK|/files/ENCFF778YDK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF778YDK|/files/ENCFF778YDK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.01. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR439OCL | float |
TF_ChIP-seq_ENCSR439OCL |
TF_ChIP-seq ENCSR439OCL [biosample_summary="Homo sapiens K562" and target="ZNF407"]
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[10.3, 1.75e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF932UEC.bed.gz | 67.92 KB | 59e0cbc48512175f74a3919e0576ad96 |
| ENCFF932UEC.bed.gz.dvc | 99.0 B | 21dcc2c367fe7fd26402bed16f7b4fff |
| ENCFF932UEC.tabix.bed.gz | 46.89 KB | 76383c91c3497f5698b1050aca010e7f |
| ENCFF932UEC.tabix.bed.gz.dvc | 105.0 B | f4b2c1e9dc4448a10dd22147abaaea7a |
| ENCFF932UEC.tabix.bed.gz.tbi | 36.54 KB | 06f0cb2828fc50b38b032d9ea5a18ec0 |
| ENCFF932UEC.tabix.bed.gz.tbi.dvc | 109.0 B | 87aec4bb1555c9b2cbc967265c707d45 |
| genomic_resource.yaml | 3.68 KB | 75cdbeea8a07ec443a1b1d1fa69b6822 |
| genomic_resource_original.yaml | 3.59 KB | aeed4635ba4e9b6f062335c3086c4a57 |
| statistics/ |