TF_ChIP-seq_ENCSR438RRM
TF_ChIP-seq ENCSR438RRM [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1" and target="FOXM1"]
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| Id: | TF_ChIP-seq/ENCSR438RRM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR438RRM [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1" and target="FOXM1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN139WOL|/analyses/ENCAN139WOL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF737ZRC|/files/ENCFF737ZRC/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline has 19962635 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXM1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF003ZFW|/files/ENCFF003ZFW/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline has 19566581 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXM1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF737ZRC|/files/ENCFF737ZRC/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF737ZRC|/files/ENCFF737ZRC/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.78. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF003ZFW|/files/ENCFF003ZFW/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF003ZFW|/files/ENCFF003ZFW/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.66. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR438RRM | float |
TF_ChIP-seq_ENCSR438RRM |
TF_ChIP-seq ENCSR438RRM [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1" and target="FOXM1"]
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[7.71, 570] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF820MJD.bed.gz | 121.08 KB | 61b39bbf0d7ffe5a6bee6af1876bf902 |
| ENCFF820MJD.bed.gz.dvc | 100.0 B | d0138a6c6b70d772975b63e1c23af1ea |
| ENCFF820MJD.tabix.bed.gz | 94.82 KB | fd6df3a146d1fc6b7ce36131c87e7d8e |
| ENCFF820MJD.tabix.bed.gz.dvc | 105.0 B | d186c3579494eaf16eaca2b293536b10 |
| ENCFF820MJD.tabix.bed.gz.tbi | 46.48 KB | dee46a24a6cc7302eb3fa12213a15cf8 |
| ENCFF820MJD.tabix.bed.gz.tbi.dvc | 109.0 B | 7d1e81ab630166749850b2c82c2db892 |
| genomic_resource.yaml | 5.2 KB | b5399ae23f25cb7a54339fba822b0e2e |
| genomic_resource_original.yaml | 5.03 KB | 0b93cf7adb28700e82c196ee8032baeb |
| statistics/ |