TF_ChIP-seq_ENCSR436CZV
TF_ChIP-seq ENCSR436CZV [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens AFF4" and target="AFF4"]
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| Id: | TF_ChIP-seq/ENCSR436CZV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR436CZV [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens AFF4" and target="AFF4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens AFF4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN806SGR|/analyses/ENCAN806SGR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF451HZU|/files/ENCFF451HZU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF451HZU|/files/ENCFF451HZU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.17. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF896HDZ|/files/ENCFF896HDZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF896HDZ|/files/ENCFF896HDZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.48. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR436CZV | float |
TF_ChIP-seq_ENCSR436CZV |
TF_ChIP-seq ENCSR436CZV [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens AFF4" and target="AFF4"]
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[10.9, 471] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF142MJD.bed.gz | 251.76 KB | c8f76e772192439a7847dbbea9f73f40 |
| ENCFF142MJD.bed.gz.dvc | 100.0 B | 9a2c8c07e758f05e2f09b664e931a119 |
| ENCFF142MJD.tabix.bed.gz | 203.27 KB | 0bd94532072cb526d352e2125a84d093 |
| ENCFF142MJD.tabix.bed.gz.dvc | 106.0 B | 8b98f74cde605f795b74454eba81a604 |
| ENCFF142MJD.tabix.bed.gz.tbi | 74.69 KB | f0286333969c029ef9c6e5835b8e7c02 |
| ENCFF142MJD.tabix.bed.gz.tbi.dvc | 109.0 B | 0b5a3305938dc7985a420c4c9945b6f6 |
| genomic_resource.yaml | 4.22 KB | b8bcf9d59385626eb65173a5955e0c2b |
| genomic_resource_original.yaml | 4.06 KB | 4623946d985095db399efa5c25e33031 |
| statistics/ |