TF_ChIP-seq_ENCSR434ZNS
TF_ChIP-seq ENCSR434ZNS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens WIZ" and target="WIZ"]
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| Id: | TF_ChIP-seq/ENCSR434ZNS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR434ZNS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens WIZ" and target="WIZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens WIZ output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN506BRZ|/analyses/ENCAN506BRZ/} has in progress subobject document {83ce4fd3-63f8-46f1-a9c6-ffb3d7174faa|/documents/83ce4fd3-63f8-46f1-a9c6-ffb3d7174faa/} audit_internal_action: Released analysis {ENCAN506BRZ|/analyses/ENCAN506BRZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF256NJS|/files/ENCFF256NJS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF256NJS|/files/ENCFF256NJS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.29. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF402ZIR|/files/ENCFF402ZIR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF402ZIR|/files/ENCFF402ZIR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR434ZNS | float |
TF_ChIP-seq_ENCSR434ZNS |
TF_ChIP-seq ENCSR434ZNS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens WIZ" and target="WIZ"]
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[11.5, 541] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF985SRX.bed.gz | 187.78 KB | 0d7ab2636004941a3a8ac2db38ea4a96 |
| ENCFF985SRX.bed.gz.dvc | 100.0 B | 9089497051dd17979a42298c91770bec |
| ENCFF985SRX.tabix.bed.gz | 143.98 KB | d0989439f84915bd82faf159b0fa4184 |
| ENCFF985SRX.tabix.bed.gz.dvc | 106.0 B | bf26c7158b3dc77661f4d9e5238264f9 |
| ENCFF985SRX.tabix.bed.gz.tbi | 71.51 KB | d9659df50fa580e0a90523ffc1967d39 |
| ENCFF985SRX.tabix.bed.gz.tbi.dvc | 109.0 B | 09fb64e11521c1d56c6652b4b5f2086a |
| genomic_resource.yaml | 4.43 KB | 80930743cbe89a3e1bd45a2c41fc1024 |
| genomic_resource_original.yaml | 4.27 KB | 427dfb9d1c89e1628f1270d783dbf9ea |
| statistics/ |