TF_ChIP-seq_ENCSR432GAO
TF_ChIP-seq ENCSR432GAO [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR432GAO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR432GAO [biosamplesummary="Homo sapiens thyroid gland tissue female adult (51 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN196XHQ|/analyses/ENCAN196XHQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF445NPR|/files/ENCFF445NPR/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF308XAR|/files/ENCFF308XAR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF308XAR|/files/ENCFF308XAR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR432GAO | float |
TF_ChIP-seq_ENCSR432GAO |
TF_ChIP-seq ENCSR432GAO [biosample_summary="Homo sapiens thyroid gland tissue female adult (51 years)" and target="POLR2A"]
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[8.15, 3.68e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF445NPR.bed.gz | 624.81 KB | c6ae035d4839a5374de56a2d018aac15 |
| ENCFF445NPR.bed.gz.dvc | 100.0 B | ae309bca3b36619b713d2ff5f3bf0d4f |
| ENCFF445NPR.tabix.bed.gz | 422.31 KB | 2511937a476eb46822cf6b718b4bc3fc |
| ENCFF445NPR.tabix.bed.gz.dvc | 106.0 B | 2d5e787a107df0e1d6573b9c475064c9 |
| ENCFF445NPR.tabix.bed.gz.tbi | 163.73 KB | 5c3514c822ab1881d42af6ea859c9c71 |
| ENCFF445NPR.tabix.bed.gz.tbi.dvc | 110.0 B | abe240a68f3e115812c443b1097e4d0d |
| genomic_resource.yaml | 2.94 KB | ae3284d18829550e4e44b02b8e3d963a |
| genomic_resource_original.yaml | 2.81 KB | 6b97152dcab08bae20545907cee6b529 |
| statistics/ |