TF_ChIP-seq_ENCSR431FOF
TF_ChIP-seq ENCSR431FOF [biosample_summary="Homo sapiens HepG2" and target="CHD4"]
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| Id: | TF_ChIP-seq/ENCSR431FOF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR431FOF [biosamplesummary="Homo sapiens HepG2" and target="CHD4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN516WAM|/analyses/ENCAN516WAM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF148ABR|/files/ENCFF148ABR/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF493GFN|/files/ENCFF493GFN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF493GFN|/files/ENCFF493GFN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.02. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF029RXI|/files/ENCFF029RXI/}, {ENCFF148ABR|/files/ENCFF148ABR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.74 and a self consistency ratio of 4.23. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF352SAQ|/files/ENCFF352SAQ/}, {ENCFF846OPE|/files/ENCFF846OPE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.74 and a self consistency ratio of 4.23. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR431FOF | float |
TF_ChIP-seq_ENCSR431FOF |
TF_ChIP-seq ENCSR431FOF [biosample_summary="Homo sapiens HepG2" and target="CHD4"]
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[8.77, 263] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF148ABR.bed.gz | 266.38 KB | 05d330994f4e0d15c2291612f10abe6a |
| ENCFF148ABR.bed.gz.dvc | 100.0 B | 40ebde7d82d37073a155403172dc5ba7 |
| ENCFF148ABR.tabix.bed.gz | 205.81 KB | 4a3c138a4c1af6011ec22509cca592db |
| ENCFF148ABR.tabix.bed.gz.dvc | 106.0 B | ab2e4e5db563ac95bdf2d33af215c819 |
| ENCFF148ABR.tabix.bed.gz.tbi | 79.15 KB | abb48a03b487137e19fe675828c8c8de |
| ENCFF148ABR.tabix.bed.gz.tbi.dvc | 109.0 B | 869af24806f55a1bce418519a95b6851 |
| genomic_resource.yaml | 3.96 KB | c188aaf2199c005fdb327faddf17f04c |
| genomic_resource_original.yaml | 3.87 KB | a8e34eeb5fe7acc7fe4efcc7ba7c0c32 |
| statistics/ |