TF_ChIP-seq_ENCSR430BKC
TF_ChIP-seq ENCSR430BKC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CSRNP1" and target="CSRNP1"]
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| Id: | TF_ChIP-seq/ENCSR430BKC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR430BKC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CSRNP1" and target="CSRNP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CSRNP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN002OXI|/analyses/ENCAN002OXI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF903ZMW|/files/ENCFF903ZMW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF903ZMW|/files/ENCFF903ZMW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.58. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF414CVU|/files/ENCFF414CVU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF414CVU|/files/ENCFF414CVU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.67. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR430BKC | float |
TF_ChIP-seq_ENCSR430BKC |
TF_ChIP-seq ENCSR430BKC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CSRNP1" and target="CSRNP1"]
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[11.2, 454] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF330OKC.bed.gz | 310.38 KB | dc9b234e815f5204f464bf277f2539ff |
| ENCFF330OKC.bed.gz.dvc | 100.0 B | 5d6335ca3e439428529283c0fe07b05c |
| ENCFF330OKC.tabix.bed.gz | 246.86 KB | f33147dd1729fec9b199b94c191ad6e8 |
| ENCFF330OKC.tabix.bed.gz.dvc | 106.0 B | ed47dd83113b75e7c1a9ef3c1400e6a7 |
| ENCFF330OKC.tabix.bed.gz.tbi | 93.91 KB | 818095620ebf4bf68fd2fe04ec800abe |
| ENCFF330OKC.tabix.bed.gz.tbi.dvc | 109.0 B | 55a0304916bc0241d9b96eb5a4454924 |
| genomic_resource.yaml | 4.24 KB | 3b66d3d0410dcfa4bf51ee90102a5294 |
| genomic_resource_original.yaml | 4.07 KB | 2c99c1a35a87892a400f29a71ff72f86 |
| statistics/ |